If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ), 'gf_id' => 'HOM05D000718', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000718' ), 'data_identifier' => 'HOM05D000718', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000718', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '804', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38930' => 'bna', 'A02p16980' => 'bna', 'A03p02320' => 'bna', 'A03p39050' => 'bna', 'A04p30960' => 'bna', 'A05p01750' => 'bna', 'A05p02880' => 'bna', 'A05p34500' => 'bna', 'A06p47400' => 'bna', 'A08p16250' => 'bna', 'Aa31LG11G6550' => 'aar', 'Aa31LG5G19010' => 'aar', 'Aa31LG8G2120' => 'aar', 'Aa31LG8G2130' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3537' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1801' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3820' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.449' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.701' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2321' => 'aag', 'Actinidia00664' => 'ach', 'Actinidia00967' => 'ach', 'Actinidia00968' => 'ach', 'Actinidia00989' => 'ach', 'Actinidia07802' => 'ach', 'Actinidia09809' => 'ach', 'Actinidia09810' => 'ach', 'Actinidia12576' => 'ach', 'Actinidia12577' => 'ach', 'Actinidia18800' => 'ach', 'Actinidia29746' => 'ach', 'Actinidia35212' => 'ach', 'Ah.04g164270' => 'amhyb', 'Ah.04g164280' => 'amhyb', 'Ah.10g036280' => 'amhyb', 'Ah.14g085480' => 'amhyb', 'Ah.16g103840' => 'amhyb', 'AL3G27230' => 'aly', 'AL3G27240' => 'aly', 'AL3G27250' => 'aly', 'AL4G38340' => 'aly', 'AL6G15370' => 'aly', 'Aqoxy1G01319' => 'aox', 'Aqoxy1G02040' => 'aox', 'Aqoxy2G00740' => 'aox', 'Aqoxy4G00321' => 'aox', 'Aqoxy5G04048' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3QD2VV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I10M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IHZ0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A9E66P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8YC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE8RQQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EI43SS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6LY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HI2B5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT467D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2Z725' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1NN8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2XJM8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4U7QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.STN4DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5TV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1NVS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48Z1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZMS7Y8' => 'arhy', 'AT2G40490' => 'ath', 'AT3G14910' => 'ath', 'AT3G14920' => 'ath', 'AT3G14930' => 'ath', 'AT5G05480' => 'ath', 'ATR0585G012' => 'atr', 'ATR0585G075' => 'atr', 'ATR0602G054' => 'atr', 'ATR0602G196' => 'atr', 'ATR0681G070' => 'atr', 'ATR1131G065' => 'atr', 'Atru.chr12.151' => 'acertr', 'Atru.chr12.75' => 'acertr', 'Atru.chr2.2147' => 'acertr', 'Atru.chr2.2149' => 'acertr', 'Atru.chr2.2150' => 'acertr', 'Atru.chr2.2151' => 'acertr', 'Atru.chr4.2167' => 'acertr', 'AUR62012291' => 'cqu', 'AUR62012354' => 'cqu', 'AUR62019575' => 'cqu', 'AUR62026397' => 'cqu', 'AUR62027453' => 'cqu', 'AUR62031246' => 'cqu', 'AUR62042779' => 'cqu', 'AUR62043570' => 'cqu', 'AUR62044186' => 'cqu', 'BcaB01g03535' => 'bca', 'BcaB01g05760' => 'bca', 'BcaB01g05951' => 'bca', 'BcaB04g20956' => 'bca', 'BcaB06g25332' => 'bca', 'BcaB06g29518' => 'bca', 'BcaC01g02088' => 'bca', 'BcaC01g03912' => 'bca', 'BcaC02g12719' => 'bca', 'BcaC06g33239' => 'bca', 'BcaC07g39394' => 'bca', 'BcaC09g48457' => 'bca', 'BolC1t04911H' => 'bol', 'BolC3t12818H' => 'bol', 'BolC3t17002H' => 'bol', 'BolC3t19125H' => 'bol', 'BolC4t21853H' => 'bol', 'BolC4t28337H' => 'bol', 'BolC5t33912H' => 'bol', 'BolC5t33913H' => 'bol', 'BolC7t45040H' => 'bol', 'BolC8t50040H' => 'bol', 'BolC9t59605H' => 'bol', 'BraA01t03941Z' => 'bra', 'BraA01t04413Z' => 'bra', 'BraA02t06747Z' => 'bra', 'BraA03t09595Z' => 'bra', 'BraA03t13054Z' => 'bra', 'BraA04t18554Z' => 'bra', 'BraA05t19172Z' => 'bra', 'BraA05t22270Z' => 'bra', 'C01p49560' => 'bna', 'C02p50010' => 'bna', 'C03p02640' => 'bna', 'C03p47320' => 'bna', 'C03p68720' => 'bna', 'C04p02020' => 'bna', 'C04p68350' => 'bna', 'C05p52240' => 'bna', 'C07p45170' => 'bna', 'C08p24230' => 'bna', 'CAN.G1058.7' => 'can', 'CAN.G1119.2' => 'can', 'CAN.G1119.3' => 'can', 'CAN.G1131.34' => 'can', 'CAN.G160.51' => 'can', 'CAN.G1638.1' => 'can', 'CAN.G17.21' => 'can', 'CAN.G1937.2' => 'can', 'CAN.G199.77' => 'can', 'CAN.G22.38' => 'can', 'CAN.G220.30' => 'can', 'CAN.G229.29' => 'can', 'CAN.G2296.1' => 'can', 'CAN.G24005.1' => 'can', 'CAN.G248.53' => 'can', 'CAN.G291.4' => 'can', 'CAN.G323.3' => 'can', 'CAN.G323.4' => 'can', 'CAN.G375.13' => 'can', 'CAN.G375.14' => 'can', 'CAN.G398.18' => 'can', 'CAN.G46.30' => 'can', 'CAN.G46.37' => 'can', 'CAN.G610.1' => 'can', 'CAN.G65.158' => 'can', 'CAN.G713.20' => 'can', 'CAN.G749.38' => 'can', 'CAN.G766.5' => 'can', 'CAN.G904.36' => 'can', 'CAN.G957.1' => 'can', 'CAN.G97.47' => 'can', 'CANSAT35G0289' => 'cansat', 'CANSAT35G0358' => 'cansat', 'CANSAT35G0553' => 'cansat', 'CANSAT35G0570' => 'cansat', 'CANSAT56G0708' => 'cansat', 'CANSAT56G2074' => 'cansat', 'CANSAT56G2552' => 'cansat', 'CARHR089850' => 'chi', 'CARHR089860' => 'chi', 'CARHR089870' => 'chi', 'CARHR135610' => 'chi', 'CARHR207800' => 'chi', 'Carub.0003s1457' => 'cru', 'Carub.0003s1458' => 'cru', 'Carub.0003s1459' => 'cru', 'Carub.0004s2275' => 'cru', 'Carub.0006s0438' => 'cru', 'Ca_03980_v3' => 'car', 'Ca_05989_v3' => 'car', 'Ca_12194_v3' => 'car', 'Ca_15183_v3' => 'car', 'Ca_23001_v3' => 'car', 'CBR_g3876' => 'cbr', 'CBR_g41405' => 'cbr', 'Cc02_g05570' => 'ccan', 'Cc05_g11090' => 'ccan', 'Cc05_g11100' => 'ccan', 'Cc05_g11120' => 'ccan', 'Cc05_g14680' => 'ccan', 'CDE02G4266' => 'cde', 'CDE04G1093' => 'cde', 'CDE04G2759' => 'cde', 'CDE06G2768' => 'cde', 'CDE09G1214' => 'cde', 'CDE10G1200' => 'cde', 'CDE11G1161' => 'cde', 'CDE12G0570' => 'cde', 'Cfa001226' => 'cfa', 'Cfa001285' => 'cfa', 'Cfa019567' => 'cfa', 'Cfa022033' => 'cfa', 'Ciclev10020934m.g' => 'ccl', 'Ciclev10021020m.g' => 'ccl', 'Ciclev10021305m.g' => 'ccl', 'Ciclev10023870m.g' => 'ccl', 'Ciclev10031049m.g' => 'ccl', 'Ciclev10031799m.g' => 'ccl', 'CiPaw.01G301200' => 'cil', 'CiPaw.01G304800' => 'cil', 'CiPaw.02G198100' => 'cil', 'CiPaw.11G160400' => 'cil', 'CiPaw.11G160500' => 'cil', 'CiPaw.12G113500' => 'cil', 'ClCG07G004870' => 'cla', 'ClCG07G010290' => 'cla', 'ClCG11G017460' => 'cla', 'ClCG11G017470' => 'cla', 'COL.COLO4_17547' => 'col', 'COL.COLO4_17553' => 'col', 'COL.COLO4_25780' => 'col', 'Cpa.g.c30496' => 'cpa', 'Cpa.g.c47142' => 'cpa', 'Cpa.g.sc19.140' => 'cpa', 'Cpa.g.sc19.88' => 'cpa', 'Cpa.g.sc77.4' => 'cpa', 'Cpa.g.sc77.7' => 'cpa', 'Cre02.g073700' => 'cre', 'Cre02.g076300' => 'cre', 'Cre11.g467700' => 'cre', 'Cre12.g546450' => 'cre', 'CsaV3_4G008050' => 'csa', 'CsaV3_4G033110' => 'csa', 'CsaV3_4G033130' => 'csa', 'CsaV3_5G010770' => 'csa', 'CSS0001230' => 'camsi', 'CSS0001779' => 'camsi', 'CSS0004968' => 'camsi', 'CSS0014195' => 'camsi', 'CSS0021542' => 'camsi', 'CSS0036662' => 'camsi', 'CSS0038708' => 'camsi', 'CSS0040392' => 'camsi', 'CSS0041733' => 'camsi', 'CSS0043856' => 'camsi', 'CSS0044621' => 'camsi', 'DCAR_011838' => 'dca', 'DCAR_013154' => 'dca', 'DCAR_013156' => 'dca', 'DCAR_017171' => 'dca', 'DCAR_021024' => 'dca', 'DCAR_024057' => 'dca', 'Dinv10547' => 'din', 'Dinv10593' => 'din', 'Dinv14992' => 'din', 'Dinv14993' => 'din', 'Dinv18363' => 'din', 'Dinv18364' => 'din', 'Dinv21768' => 'din', 'Duzib106G1765' => 'dzi', 'Duzib114G0351' => 'dzi', 'Duzib128G1912' => 'dzi', 'Duzib187G1570' => 'dzi', 'Duzib213G0085' => 'dzi', 'Duzib213G0325' => 'dzi', 'Duzib213G0559' => 'dzi', 'Duzib268G1121' => 'dzi', 'ECA233G4952' => 'eca', 'ECA233G5735' => 'eca', 'ECA236G1192' => 'eca', 'ECA240G0560' => 'eca', 'ECA240G1747' => 'eca', 'ECA248G1360' => 'eca', 'EL10Ac2g04263' => 'bvu', 'EL10Ac2g04884' => 'bvu', 'EL10Ac4g08341' => 'bvu', 'EL10Ac4g08342' => 'bvu', 'EL10Ac4g08344' => 'bvu', 'Eucgr.F01239' => 'egr', 'Eucgr.F03269' => 'egr', 'Eucgr.F03272' => 'egr', 'Eucgr.F03273' => 'egr', 'Eucgr.F04473' => 'egr', 'Eucgr.G03125' => 'egr', 'Eucgr.G03384' => 'egr', 'Eucgr.J00177' => 'egr', 'Eucgr.K01884' => 'egr', 'FAN01G1214' => 'fan', 'FAN01G2280' => 'fan', 'FAN03G1787' => 'fan', 'FAN03G3360' => 'fan', 'FAN06G2707' => 'fan', 'FAN06G4082' => 'fan', 'FAN06G4949' => 'fan', 'FAN10G0473' => 'fan', 'FAN10G2475' => 'fan', 'FAN11G0057' => 'fan', 'FAN11G1179' => 'fan', 'FAN11G2178' => 'fan', 'FAN16G0238' => 'fan', 'FAN16G1727' => 'fan', 'FAN16G3513' => 'fan', 'FAN21G0298' => 'fan', 'FAN21G1491' => 'fan', 'FAN21G2233' => 'fan', 'FAN21G3716' => 'fan', 'FAN25G1161' => 'fan', 'FAN25G1976' => 'fan', 'FAN25G2426' => 'fan', 'FAN25G3621' => 'fan', 'FvH4_3g18310' => 'fve', 'FvH4_3g18311' => 'fve', 'FvH4_3g18320' => 'fve', 'FvH4_3g18330' => 'fve', 'FvH4_7g24990' => 'fve', 'FvH4_7g25624' => 'fve', 'Glyma.02G263400' => 'gma', 'Glyma.06G228800' => 'gma', 'Glyma.06G228900' => 'gma', 'Glyma.11G235400' => 'gma', 'Glyma.12G157500' => 'gma', 'Glyma.12G157600' => 'gma', 'Glyma.12G229700' => 'gma', 'Glyma.13G269900' => 'gma', 'Glyma.14G057000' => 'gma', 'Glyma.18G021500' => 'gma', 'Gohir.A01G054400' => 'ghi', 'Gohir.A01G055000' => 'ghi', 'Gohir.A01G055100' => 'ghi', 'Gohir.A04G042000' => 'ghi', 'Gohir.A05G279500' => 'ghi', 'Gohir.A06G162000' => 'ghi', 'Gohir.A07G182100' => 'ghi', 'Gohir.A11G287641' => 'ghi', 'Gohir.A13G149401' => 'ghi', 'Gohir.D01G042724' => 'ghi', 'Gohir.D01G042754' => 'ghi', 'Gohir.D01G042756' => 'ghi', 'Gohir.D01G110450' => 'ghi', 'Gohir.D05G281100' => 'ghi', 'Gohir.D05G341200' => 'ghi', 'Gohir.D06G167600' => 'ghi', 'Gohir.D11G305512' => 'ghi', 'Gohir.D13G153800' => 'ghi', 'Gohir.D13G153900' => 'ghi', 'Gorai.002G054700' => 'gra', 'Gorai.002G060900' => 'gra', 'Gorai.002G135100' => 'gra', 'Gorai.007G326900' => 'gra', 'Gorai.009G294500' => 'gra', 'Gorai.009G367900' => 'gra', 'Gorai.010G195500' => 'gra', 'Gorai.013G173800' => 'gra', 'GSVIVG01014199001' => 'vvi', 'GSVIVG01014200001' => 'vvi', 'GSVIVG01032710001' => 'vvi', 'GSVIVG01032764001' => 'vvi', 'HanXRQChr02g0036271' => 'han', 'HanXRQChr03g0070661' => 'han', 'HanXRQChr08g0222021' => 'han', 'HanXRQChr08g0222031' => 'han', 'HanXRQChr08g0222051' => 'han', 'HanXRQChr11g0349871' => 'han', 'HanXRQChr13g0390381' => 'han', 'HanXRQChr14g0460221' => 'han', 'HanXRQChr15g0476211' => 'han', 'HanXRQChr15g0476221' => 'han', 'HanXRQChr17g0534531' => 'han', 'Haze_09324' => 'cav', 'Haze_09325' => 'cav', 'Haze_09327' => 'cav', 'Haze_17266' => 'cav', 'Haze_17336' => 'cav', 'Hma1.2p1_0290F.1_g114780' => 'hma', 'Hma1.2p1_0292F.1_g115790' => 'hma', 'Hma1.2p1_1240F.1_g269520' => 'hma', 'Hma1.2p1_1738F.1_g300000' => 'hma', 'Hma1.2p1_1939F.1_g308310' => 'hma', 'Hma1.2p1_3100F.1_g332700' => 'hma', 'HPP92_000715' => 'vpl', 'HPP92_005195' => 'vpl', 'HPP92_008795' => 'vpl', 'HPP92_013775' => 'vpl', 'HPP92_013776' => 'vpl', 'HPP92_013777' => 'vpl', 'HPP92_019063' => 'vpl', 'HPP92_019101' => 'vpl', 'HPP92_021764' => 'vpl', 'HPP92_023429' => 'vpl', 'HPP92_023755' => 'vpl', 'HPP92_024044' => 'vpl', 'HPP92_026762' => 'vpl', 'Hund02252' => 'sun', 'Hund02254' => 'sun', 'Hund10558' => 'sun', 'Hund13472' => 'sun', 'Lalb_Chr01g0006831' => 'lal', 'Lalb_Chr03g0031171' => 'lal', 'Lalb_Chr10g0105251' => 'lal', 'Lalb_Chr10g0105431' => 'lal', 'Lalb_Chr19g0133791' => 'lal', 'Lalb_Chr25g0285891' => 'lal', 'Lj1A829G32' => 'lonja', 'Lj1C830G9' => 'lonja', 'Lj1P830T16' => 'lonja', 'Lj2g0023746' => 'lja', 'Lj3g0001987' => 'lja', 'Lj3g0017131' => 'lja', 'Lj3g0020389' => 'lja', 'Lj5g0016080' => 'lja', 'Lj6g0023462' => 'lja', 'Lj8A148G36' => 'lonja', 'Lj8A57T61' => 'lonja', 'Lj8A63T90' => 'lonja', 'LjContig00357g0006743' => 'lja', 'Lsat_1_v5_gn_2_125401' => 'lsa', 'Lsat_1_v5_gn_6_15881' => 'lsa', 'Lsat_1_v5_gn_7_73881' => 'lsa', 'Lsat_1_v5_gn_8_12880' => 'lsa', 'Lsat_1_v5_gn_9_100000' => 'lsa', 'Lsat_1_v5_gn_9_99900' => 'lsa', 'Lsat_1_v5_gn_9_99920' => 'lsa', 'Lsat_1_v5_gn_9_99940' => 'lsa', 'Manes.03G101200' => 'mes', 'Manes.03G101300' => 'mes', 'Manes.03G101500' => 'mes', 'Manes.07G064566' => 'mes', 'Manes.07G064700' => 'mes', 'Manes.07G133002' => 'mes', 'Manes.07G134200' => 'mes', 'Manes.07G138000' => 'mes', 'Manes.10G005300' => 'mes', 'Manes.10G009200' => 'mes', 'Manes.10G009300' => 'mes', 'Manes.15G094700' => 'mes', 'Mapoly0015s0009' => 'mpo', 'Mapoly0061s0004' => 'mpo', 'Mapoly0103s0078' => 'mpo', 'Mapoly0204s0015' => 'mpo', 'MBI06_g08604_MAGBIO' => 'mbi', 'MBI06_g29323_MAGBIO' => 'mbi', 'MBI07_g09566_MAGBIO' => 'mbi', 'MBI07_g09572_MAGBIO' => 'mbi', 'MBI07_g35375_MAGBIO' => 'mbi', 'MBI15_g05815_MAGBIO' => 'mbi', 'MBI15_g12396_MAGBIO' => 'mbi', 'MBI15_g12397_MAGBIO' => 'mbi', 'MBI15_g12398_MAGBIO' => 'mbi', 'MBI15_g22072_MAGBIO' => 'mbi', 'MCO01G408' => 'mco', 'MCO01G506' => 'mco', 'MCO04G531' => 'mco', 'MD01G1163500' => 'mdo', 'MD03G1242800' => 'mdo', 'MD03G1242900' => 'mdo', 'MD03G1243300' => 'mdo', 'MD03G1243400' => 'mdo', 'MD03G1243500' => 'mdo', 'MD07G1231500' => 'mdo', 'MD08G1248900' => 'mdo', 'MD11G1263300' => 'mdo', 'MD11G1263600' => 'mdo', 'MD11G1263700' => 'mdo', 'MD13G1225000' => 'mdo', 'MD16G1147200' => 'mdo', 'Medtr1g023030' => 'mtr', 'Medtr1g023035' => 'mtr', 'Medtr2g076340' => 'mtr', 'Medtr3g029720' => 'mtr', 'Medtr3g072330' => 'mtr', 'Medtr5g083160' => 'mtr', 'Medtr8g464030' => 'mtr', 'MELO3C016131.2' => 'cme', 'MELO3C020115.2' => 'cme', 'MELO3C025638.2' => 'cme', 'MELO3C025639.2' => 'cme', 'Migut.F00642' => 'egut', 'Migut.F01259' => 'egut', 'Migut.H01995' => 'egut', 'Migut.H01996' => 'egut', 'Migut.H01998' => 'egut', 'Migut.M00729' => 'egut', 'Migut.M00730' => 'egut', 'MSTRG.14231' => 'ama', 'MSTRG.14233' => 'ama', 'MSTRG.14962' => 'ama', 'MSTRG.182' => 'ama', 'MSTRG.27305' => 'ama', 'MSTRG.27306' => 'ama', 'MSTRG.6676' => 'ama', 'MSTRG.8367' => 'ama', 'Nitab4.5_0000035g0180' => 'nta', 'Nitab4.5_0000058g0170' => 'nta', 'Nitab4.5_0000058g0180' => 'nta', 'Nitab4.5_0000263g0250' => 'nta', 'Nitab4.5_0000383g0140' => 'nta', 'Nitab4.5_0000409g0060' => 'nta', 'Nitab4.5_0000409g0110' => 'nta', 'Nitab4.5_0001106g0010' => 'nta', 'Nitab4.5_0001106g0060' => 'nta', 'Nitab4.5_0002713g0040' => 'nta', 'Nitab4.5_0003565g0030' => 'nta', 'Nitab4.5_0003565g0040' => 'nta', 'Nitab4.5_0005264g0010' => 'nta', 'Nitab4.5_0006953g0030' => 'nta', 'Nitab4.5_0006953g0050' => 'nta', 'Nitab4.5_0009204g0040' => 'nta', 'Nitab4.5_0021759g0010' => 'nta', 'Nn1g04431' => 'nnu', 'Nn1g04439' => 'nnu', 'Nn1g09174' => 'nnu', 'Nn1g09180' => 'nnu', 'Nn2g10359' => 'nnu', 'Nn2g10966' => 'nnu', 'Nn2g10967' => 'nnu', 'Nn3g16317' => 'nnu', 'Nn3g18611' => 'nnu', 'Nn7g36868' => 'nnu', 'Nn8g41266' => 'nnu', 'Oeu025333.1' => 'oeu', 'Oeu031031.1' => 'oeu', 'Oeu043145.1' => 'oeu', 'Oeu056649.1' => 'oeu', 'Oeu056653.1' => 'oeu', 'Oeu061357.2' => 'oeu', 'Os01g0207200' => 'osa', 'Os01g0207400' => 'osa', 'Os01g0207600' => 'osa', 'Os01g0208400' => 'osa', 'Os01g0622300' => 'osa', 'Os03g0337600' => 'osa', 'Os03g0340001' => 'osa', 'Os05g0395000' => 'osa', 'Os05g0581100' => 'osa', 'Os09g0315800' => 'osa', 'Peaxi162Scf00111g01413' => 'pax', 'Peaxi162Scf00111g01475' => 'pax', 'Peaxi162Scf00122g00181' => 'pax', 'Peaxi162Scf00252g00416' => 'pax', 'Peaxi162Scf00284g00532' => 'pax', 'Peaxi162Scf00304g00011' => 'pax', 'Peaxi162Scf00304g00417' => 'pax', 'Peaxi162Scf00692g00513' => 'pax', 'Peaxi162Scf00692g00610' => 'pax', 'PGR031G2045' => 'pgr', 'PGR031G3118' => 'pgr', 'PGR031G3657' => 'pgr', 'PGR044G2323' => 'pgr', 'PGR102G0111' => 'pgr', 'PGR142G2177' => 'pgr', 'PGSC0003DMG400007071' => 'stu', 'PGSC0003DMG400007072' => 'stu', 'PGSC0003DMG400011947' => 'stu', 'PGSC0003DMG400015387' => 'stu', 'PGSC0003DMG400027602' => 'stu', 'PGSC0003DMG400027721' => 'stu', 'PGSC0003DMG400030029' => 'stu', 'PGSC0003DMG400030036' => 'stu', 'PGSC0003DMG401021263' => 'stu', 'PGSC0003DMG402021263' => 'stu', 'Phvul.001G248800' => 'pvu', 'Phvul.005G065500' => 'pvu', 'Phvul.008G221400' => 'pvu', 'Phvul.011G162100' => 'pvu', 'Phvul.011G162200' => 'pvu', 'Potri.001G390700' => 'ptr', 'Potri.001G390800' => 'ptr', 'Potri.008G072400' => 'ptr', 'Potri.010G185100' => 'ptr', 'Potri.011G109700' => 'ptr', 'Potri.011G109800' => 'ptr', 'Potri.013G083200' => 'ptr', 'Potri.019G048900' => 'ptr', 'Pp3c13_10750' => 'ppa', 'Pp3c18_16840' => 'ppa', 'Pp3c18_9680' => 'ppa', 'Pp3c1_3510' => 'ppa', 'Pp3c21_8420' => 'ppa', 'Pp3c22_14440' => 'ppa', 'Pp3c24_11950' => 'ppa', 'Pp3c4_25540' => 'ppa', 'Pp3c8_16580' => 'ppa', 'PRCOL_00001428' => 'pco', 'PRCOL_00002063' => 'pco', 'PRCOL_00006265' => 'pco', 'Prupe.2G255000' => 'ppe', 'Prupe.2G261500' => 'ppe', 'Prupe.4G164800' => 'ppe', 'Prupe.4G164900' => 'ppe', 'Prupe.4G165200' => 'ppe', 'Psat0s1037g0040' => 'psa', 'Psat0s911g0080' => 'psa', 'Psat2g031440' => 'psa', 'Psat2g113040' => 'psa', 'Psat3g077000' => 'psa', 'Psat4g090840' => 'psa', 'Psat5g131600' => 'psa', 'Psat6g010000' => 'psa', 'Psat6g010040' => 'psa', 'Psat6g010080' => 'psa', 'PSO017G0883' => 'pso', 'PSO017G3877' => 'pso', 'PSO170G0133' => 'pso', 'PSO170G0393' => 'pso', 'PSO170G1468' => 'pso', 'PSO170G3983' => 'pso', 'PSO229G0130' => 'pso', 'PSO339G4450' => 'pso', 'PSO339G6720' => 'pso', 'PSO384G2494' => 'pso', 'PSO478G1672' => 'pso', 'PSO541G5300' => 'pso', 'PSO675G2932' => 'pso', 'PSO675G2989' => 'pso', 'PSO782G3001' => 'pso', 'QL02p094738' => 'qlo', 'QL02p094741' => 'qlo', 'QL02p094759' => 'qlo', 'QL04p083599' => 'qlo', 'QL04p083602' => 'qlo', 'QL08p000399' => 'qlo', 'QL08p026242' => 'qlo', 'QL08p063642' => 'qlo', 'QL08p064527' => 'qlo', 'RcHm_v2.0_Chr1g0370891' => 'rch', 'RcHm_v2.0_Chr1g0371761' => 'rch', 'RcHm_v2.0_Chr1g0371821' => 'rch', 'RcHm_v2.0_Chr5g0030941' => 'rch', 'RcHm_v2.0_Chr5g0030951' => 'rch', 'RcHm_v2.0_Chr5g0030961' => 'rch', 'RcHm_v2.0_Chr5g0030971' => 'rch', 'RcHm_v2.0_Chr5g0030981' => 'rch', 'Rhsim04G0026200' => 'rsi', 'Rhsim04G0026400' => 'rsi', 'Rhsim06G0207600' => 'rsi', 'Rhsim06G0207700' => 'rsi', 'Rhsim06G0207800' => 'rsi', 'Rhsim09G0179700' => 'rsi', 'Rhsim09G0184000' => 'rsi', 'Sabra08G0053600' => 'sbr', 'Sabra11G0097100' => 'sbr', 'Sabra11G0097200' => 'sbr', 'Sabra13G0072100' => 'sbr', 'Sabra15G0066500' => 'sbr', 'Sabra19G0058400' => 'sbr', 'SalBow3G0776' => 'sbo', 'SalBow3G1153' => 'sbo', 'SalBow3G3214' => 'sbo', 'SalBow3G3385' => 'sbo', 'SalBow5G0013' => 'sbo', 'SalBow5G3639' => 'sbo', 'SalBow7G1873' => 'sbo', 'SalBow7G2456' => 'sbo', 'SalBow7G2917' => 'sbo', 'SalBow7G4178' => 'sbo', 'SalBow7G4376' => 'sbo', 'SalBow7G4548' => 'sbo', 'SalBow8G1089' => 'sbo', 'Sc10g0002570' => 'sci', 'Sc10g0002890' => 'sci', 'Sc16g0007550' => 'sci', 'Sc16g0007560' => 'sci', 'Sc16g0007570' => 'sci', 'Sc16g0007580' => 'sci', 'Sed0007519' => 'sed', 'Sed0007644' => 'sed', 'Sed0009887' => 'sed', 'Sed0022037' => 'sed', 'Sed0022890' => 'sed', 'SEGI_04892' => 'sgi', 'SEGI_08587' => 'sgi', 'SEGI_12657' => 'sgi', 'SEGI_16322' => 'sgi', 'SEGI_17269' => 'sgi', 'SEGI_21138' => 'sgi', 'SEGI_26013' => 'sgi', 'SEGI_26604' => 'sgi', 'SEGI_36027' => 'sgi', 'SGA_v2.0_scaffold130G34293' => 'sas', 'SGA_v2.0_scaffold282G46942' => 'sas', 'SGA_v2.0_scaffold31G12659' => 'sas', 'SGA_v2.0_scaffold34G13886' => 'sas', 'SGA_v2.0_scaffold44G16662' => 'sas', 'SGA_v2.0_scaffold47G17801' => 'sas', 'SGA_v2.0_scaffold70G23378' => 'sas', 'SHI27609' => 'shi', 'SHI28877' => 'shi', 'SMO141G0075' => 'smo', 'SMO147G0075' => 'smo', 'SMO170G0039' => 'smo', 'SMO347G0636' => 'smo', 'SMO356G0107' => 'smo', 'SMO367G0522' => 'smo', 'Solyc03g095850.1' => 'sly', 'Solyc06g048730.3' => 'sly', 'Solyc06g051010.1' => 'sly', 'Solyc06g051020.2' => 'sly', 'Solyc07g062450.3' => 'sly', 'Solyc07g062460.4' => 'sly', 'Solyc10g007320.3' => 'sly', 'Solyc10g007330.1' => 'sly', 'Solyc12g014270.3' => 'sly', 'Sopen03g025830' => 'spe', 'Sopen06g014940' => 'spe', 'Sopen06g016820' => 'spe', 'Sopen06g016830' => 'spe', 'Sopen07g030690' => 'spe', 'Sopen07g030700' => 'spe', 'Sopen10g003130' => 'spe', 'Sopen10g003140' => 'spe', 'Sopen12g006060' => 'spe', 'Sp3g13120' => 'spa', 'Sp3g13130' => 'spa', 'Sp3g13140' => 'spa', 'Sp4g42843' => 'spa', 'Sp6g37370' => 'spa', 'TAR623G1382' => 'tar', 'TAR624G0221' => 'tar', 'TAR627G0128' => 'tar', 'TAR627G0847' => 'tar', 'TAR629G0962' => 'tar', 'TAR636G2625' => 'tar', 'TAR636G2811' => 'tar', 'THA.LOC104803195' => 'tha', 'THA.LOC104804736' => 'tha', 'THA.LOC104815572' => 'tha', 'THA.LOC104822564' => 'tha', 'THA.LOC104826840' => 'tha', 'Thecc.07G110600' => 'tca', 'Thecc.07G110800' => 'tca', 'Thecc.07G110900' => 'tca', 'Thecc.07G111000' => 'tca', 'Thecc.07G111100' => 'tca', 'Thecc.07G111200' => 'tca', 'Thecc.07G113800' => 'tca', 'Thecc.07G114000' => 'tca', 'Thecc.07G114100' => 'tca', 'Thecc.07G114700' => 'tca', 'Thecc.07G114900' => 'tca', 'Thecc.07G115200' => 'tca', 'Thecc.07G115900' => 'tca', 'Thecc.10G011600' => 'tca', 'Thecc.10G175400' => 'tca', 'Thhalv10013053m.g' => 'esa', 'Thhalv10016760m.g' => 'esa', 'Thhalv10020708m.g' => 'esa', 'Thhalv10022319m.g' => 'esa', 'TPR.G13952' => 'tpr', 'TPR.G16488' => 'tpr', 'TPR.G30481' => 'tpr', 'TPR.G31621' => 'tpr', 'TPR.G38426' => 'tpr', 'TPR.G8087' => 'tpr', 'TWI09G0265' => 'twi', 'TWI09G1313' => 'twi', 'TWI38G1158' => 'twi', 'TWI38G2127' => 'twi', 'TWI39G0589' => 'twi', 'TWI39G1231' => 'twi', 'TWI39G1238' => 'twi', 'TWI73G0340' => 'twi', 'unitig_0.g2179' => 'ugi', 'unitig_27.g25377' => 'ugi', 'unitig_52.g17395' => 'ugi', 'unitig_747.g21401' => 'ugi', 'unitig_749.g13540' => 'ugi', 'unitig_899.g15296' => 'ugi', 'unitig_899.g15297' => 'ugi', 'vmacro09493' => 'vma', 'vmacro09494' => 'vma', 'vmacro09495' => 'vma', 'vmacro09977' => 'vma', 'vmacro10019' => 'vma', 'vmacro11935' => 'vma', 'vmacro11936' => 'vma', 'vmacro11937' => 'vma', 'vmacro11938' => 'vma', 'vmacro11939' => 'vma', 'vmacro14648' => 'vma', 'vmacro23382' => 'vma', 'vmacro23383' => 'vma', 'vmacro23384' => 'vma', 'vmacro23465' => 'vma', 'VMungo0647G0202' => 'vmu', 'VMungo1080G1900' => 'vmu', 'VMungo1127G0879' => 'vmu', 'VMungo1127G1811' => 'vmu', 'VMungo1383G0983' => 'vmu', 'VMungo1383G2311' => 'vmu', 'Zm00001eb016170' => 'zma', 'Zm00001eb160660' => 'zma', 'Zm00001eb221460' => 'zma', 'Zm00001eb287410' => 'zma', 'Zm00001eb309730' => 'zma', 'Zm00001eb338270' => 'zma', 'Zm00001eb338290' => 'zma', 'Zm00001eb358460' => 'zma', 'Zm00001eb358470' => 'zma', 'Zm00001eb358500' => 'zma', 'Zm00001eb358510' => 'zma' ) $gf_id = 'HOM05D000718' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000718' ) $data_identifier = 'HOM05D000718' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 6, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 31, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 12, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 6, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 15, 'qlo' => (int) 9, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 13, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 15, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 15, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb358510' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1